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Ontology meeting 2017-06-09

GO wiki (new pages) - Thu, 06/08/2017 - 07:33

David: Created page with "= Conference Line = *Bluejeans: https://bluejeans.com/164681006 = Agenda = For today's meeting we will focus on two things: * We will go over the latest version of the SOP..."

= Conference Line =
*Bluejeans: https://bluejeans.com/164681006

= Agenda =

For today's meeting we will focus on two things:

* We will go over the latest version of the SOP documentation for ontology editing. Pascale will go over the edits that she has made recently. Should we have a crash course in the markdown syntax?

https://github.com/geneontology/go-ontology/blob/master/src/ontology/README-editors.md

* We will go over the agenda for the advanced ontology training in Berkeley in August. Chris has started a page.

http://wiki.geneontology.org/index.php/2017_Berkeley_GO_Editors_Workshop_II


[[Category: Ontology]]
[[Category: Meetings]] David
Categories: GO Internal

2017 Berkeley GO Editors Workshop II

GO wiki (new pages) - Wed, 06/07/2017 - 20:02

Cjm: Created page with "= Agenda = == Topics == * Equivalence axioms - editors would like more guidelines on how to construct these. * OWL GCIs- Where do they live and how do they work? * Advan..."

= Agenda =

== Topics ==

* Equivalence axioms - editors would like more guidelines on how to construct these.
* OWL GCIs- Where do they live and how do they work?
* Advanced Querying?
* Pipelines and how they run. Starting jobs with ROBOT.
* Build failures
* Document the various fail messages and how to correct the issues.
* Problematic GitHub tickets/mini Projects


= Logistics =

== Accommodations ==

* http://www.fourpointssanfranciscobaybridge.com/

Getting there:

* [https://www.google.com/maps/dir/Four+Points+by+Sheraton+San+Francisco+Bay+Bridge,+Powell+Street,+Emeryville,+CA/MacArthur+BART+Station,+40th+Street,+Oakland,+CA/@37.8346259,-122.2866117,15z/am=t/data=!3m1!5s0x80857e0870dbdd83:0x571df460c4d9d3cb!4m14!4m13!1m5!1m1!1s0x80857e44a03ff3e3:0xc502416c1c31eb3a!2m2!1d-122.2939195!2d37.8381923!1m5!1m1!1s0x80857de2a98ae50d:0xc5fce433b2157d9f!2m2!1d-122.267047!2d37.8290643!3e3 shuttle from MacArthur BART]

Taxis also available from either MacArthur or Ashby

== Meeting Location ==

[http://biosciopsatberkeley.lbl.gov/location/aquatic-park-office/ Berkeley Lab, Aquatic Park Offices]

Lawrence Berkeley National Laboratory (LBNL), Aquatic Park office of Biosciences Operations at Berkeley
Physical address: 717 Potter Street, Berkeley, CA 94710

=== Travel between hotel and meeting ===

* [https://www.google.com/maps/dir/Four+Points+by+Sheraton+San+Francisco+Bay+Bridge,+Powell+Street,+Emeryville,+CA/717+Potter+St,+Berkeley,+CA+94710/@37.8448697,-122.3011831,15z/data=!3m1!4b1!4m14!4m13!1m5!1m1!1s0x80857e44a03ff3e3:0xc502416c1c31eb3a!2m2!1d-122.2939195!2d37.8381923!1m5!1m1!1s0x80857ef68fea8821:0xeaa3c4e92d0ec6a9!2m2!1d-122.294537!2d37.85145!3e2 Walk, 1.3 miles]
* [https://www.google.com/maps/dir/Four+Points+by+Sheraton+San+Francisco+Bay+Bridge,+Powell+Street,+Emeryville,+CA/717+Potter+St,+Berkeley,+CA+94710/@37.8450306,-122.3024045,15z/am=t/data=!4m14!4m13!1m5!1m1!1s0x80857e44a03ff3e3:0xc502416c1c31eb3a!2m2!1d-122.2939195!2d37.8381923!1m5!1m1!1s0x80857ef68fea8821:0xeaa3c4e92d0ec6a9!2m2!1d-122.294537!2d37.85145!3e3 Free Hollis Shuttle ]
* Taxi/Lyft/Uber

Aim to be at the lab for 9am

== Participants ==

{| {{Prettytable}}
|-
! Name
! Organization
! Comments
|-
| David Hill
| Jackson Laboratory
|
|
|-
| Kimberly Van Auken
| Caltech
|
|-
| Pascale Gaudet
| SIB Swiss Institute of Bioinformatics
|
|-
| David Osumi-Sutherland
| EBI
|
|-
|}

[[Category:Meetings]]
[[Category:Protege]] Cjm
Categories: GO Internal

Annotation Conf. Call 2017-06-13

GO wiki (new pages) - Wed, 06/07/2017 - 05:56

Vanaukenk: /* Review Corvallis Meeting Action Items */

= Bluejeans URL =
https://bluejeans.com/993661940

= Agenda =
== Review Corvallis Meeting Action Items ==
=== GO github Projects Page ===
https://github.com/orgs/geneontology/projects/1

=== Infrastructure ===
[https://github.com/geneontology/go-site/tree/master/metadata/datasets Use of YAML files for dataset provenance]

=== Noctua and GO-CAM Modeling ===
'''Action Item:''' Provide ways for users to recover and digest CAM units. Ideas include rule-based generations of text statements from model, cytoscape view of network described, etc.

=== Enrichment Analyses ===
[https://github.com/geneontology/go-site/issues/361 Contact Paul Pavlidis about regular reanalysis of genomic automatic annotations]

=== Community Interaction ===
[https://github.com/geneontology/go-site/issues/360 Improve information on citing the GO in analytical publications]

= Minutes =
*On call:




[[Category: Annotation Working Group]] Vanaukenk
Categories: GO Internal